GGA cloud load data role

The gga_load_data role, first, generates the directory tree into the organism src_data subfolders and then copies data files into the src_data directory tree.

In a second time, the role creates a “Project Data” library in the Galaxy instance, mirroring the “src_data” folder of the current organism directory tree.

Role variables

Not all variables are listed or explained in detail. For additional information about less commonly used variables, see the defaults file.

Check also the github repository at https://github.com/abims-sbr/GGA_Cloud/tree/master/roles/abims-sbr.gga_load_data

Required variables

Optional variables

To import data from remote server :

  • data_folder: Path where to copy data files

  • data_url: URL of the data

Usage

Dry mode

ansible-playbook playbook_gga_load_data.yml --check

Real mode

ansible-playbook playbook_gga_load_data.yml