GGA cloud load data role
The gga_load_data role, first, generates the directory tree into the organism src_data subfolders and then copies data files into the src_data directory tree.
In a second time, the role creates a “Project Data” library in the Galaxy instance, mirroring the “src_data” folder of the current organism directory tree.
Role variables
Not all variables are listed or explained in detail. For additional information about less commonly used variables, see the defaults file.
Check also the github repository at https://github.com/abims-sbr/GGA_Cloud/tree/master/roles/abims-sbr.gga_load_data
Required variables
repo_folder: Path where to clone the gga_load_data repository.
Optional variables
To import data from remote server :
data_folder: Path where to copy data files
data_url: URL of the data
Usage
Dry mode
ansible-playbook playbook_gga_load_data.yml --check
Real mode
ansible-playbook playbook_gga_load_data.yml